Problem in Running SparkBWA

Question

[ptb_ee]

I'm a beginner in learning bid data tools in genomics and I don't know what's the problem the command and the error details at this link (It's so long so I couldn't copy it here)

https://egyptscholars-my.sharepoint.com/personal/asmaa_ali_egyptscholars_org/_layouts/15/guestaccess.aspx?guestaccesstoken=ltfC3N59y0NBMotKvzZQF1LKoIvIoRwaUg3SbkOAuBo%3d&docid=0aa67f1b2872e4335bc09876e1c94f46c

Answer 1

[Pierre Lindenbaum]

I dont know sparqBWA but there is a problem with your path. Your errors seems to be caused by a file that sparq can't find;

16/07/02 22:47:35 ERROR BwaInterpreter: java.io.FileNotFoundException: File does not exist: /user/root/ERR000589_1.filt.fastq