hg19 annotation with sequence ontology
2
1
Entering edit mode
8.4 years ago
sacha ★ 2.4k

I wonder if an annotation database exists which contains all known feature across the whole genom hg19 using keywords from sequence ontology ?

ontology annotation • 2.0k views
ADD COMMENT
2
Entering edit mode
8.4 years ago
Denise CS ★ 5.2k

If you are interested in variants annotated according to the SO terms, download the VEP file from the Ensembl FTP for GRCh37 (=hg19).

ADD COMMENT
0
Entering edit mode

Thanks , it exacly what I need ! I give you all my gold !

ADD REPLY
1
Entering edit mode
8.4 years ago
Asdp ▴ 40

You can use Variant Effect Predictor or SnpEff to annotate Sequence Ontology features.

http://www.ensembl.org/info/genome/variation/predicted_data.html

http://snpeff.sourceforge.net/

ADD COMMENT

Login before adding your answer.

Traffic: 1744 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6