Bismark: bismark2bedGraph option to add trinucleotide context option

Question

[florian.noack]

Hi everybody, I just started to use Bismark and I love it. However I missing one option to add the trinucleotide context of cytosines which I analyse. Since Iam interested in both CpG as well as non CpG methylation this information would be great. I know "coverage 2cytosine" has this additional information but since Iam only interested in very small regions of the genome (BSamplicon-seq) it would be a wast of resources to use this module.

May someone has a idea ?

Thanks a lot, Flo