pattern finding between sequences

Question

[srivvivek20]

How to find pattern between these sequences? That generated by regx -

GGGGGTGGAGG,GGCGGGGTGGGGG,GGCGGGGGGGG how to find GQSes between these sequences?

[Ram]

Please word your question better and give us more context. Please read item #3 on A: How do I ask a question on Biostars?

[natasha.sernova]

See also this site, it may be helpful.

http://www.bioinformatics.org/sms2/dna_pattern.html

But you have to ask for a particular pattern.

[John]

What does GQS stand for? It's a new term for me :)

[GenoMax]

G-quadruplex forming sequences (GQS).

[GenoMax]

You can use fuzznuc from EMBOSS.