4C-ker and rat genome

Question

[tlgolan]

Hi, Does 4C-ker analysis support Rn6 genome (the updated version of Rat genome)? Thanks, Tal

Answer 1

[IP]

Hi, the authors of 4C-seq did publish an script to digest a genome. That can be found on their github page https://github.com/rr1859/R.4Cker

As long as you digest the Rn6 genome with your primary restriction enzyme and do downstream analysis consequently, it will support that.