projecting short reads on the transcript
0
0
Entering edit mode
8.4 years ago
ashkan ▴ 160

Hi

I am going to project short reads (from sequencing) on the transcriptome. does anyone know how I can do that. my final goal is to get the density of reads from start to stop codons.

thatnks

sequencing alignment • 1.2k views
ADD COMMENT
0
Entering edit mode

If you are aligning reads then in a way you are doing that already. If projection means visual display then a genome browser tool like IGV would be appropriate. An interval file and a package like featureCounts would allow you to get "density" (# reads) at any position.

ADD REPLY

Login before adding your answer.

Traffic: 1991 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6