how to make the difference between a specific strand and unstranded bam with visualisation

Question

[Bioiris]

Hello,

how to make the difference between a specific strand bam and another unstranded in IGV

thank you

Answer 1

[EagleEye]

I guess this will give you some idea what to look for, on IGV to check strand information (If you unaware of the protocol used for library preparation).

http://onetipperday.sterding.com/2012/07/how-to-tell-which-library-type-to-use.html

(Beware of the users comment from this blog - consider this too)