Obtaining CDS and protein sequences from SNPEff
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8.3 years ago
jsgounot ▴ 170

Hi,

I used SNPEff to determine the impact of SNPs from vcf files and it worked well. However, I would like to obtain the complete coding and protein sequences of the different genes. I know the command dump from SNPEff but I wonder if there is a more easier way to obtain the differents sequences, since the generated output file seems to need a custom parser (I'm using python).

Thanks !

SNPEff • 2.0k views
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