Hi, I used exomeCNV to do CNV analysis for my WXS data. The main output file (cnv.txt) is as follows:
chr probe_start probe_end coverage targeted.base sequenced.base copy.number logR ratio spec sens average.coverage chr1 32757708 32799227 232042 41520 0 2 -0.1757 0.885337846269121 0.999999992699122 0.999999989882057 5.58868015414258 chr10 17270258 129924468 1989663 144219 0 2 0.0607 1.04297169111272 1 1 13.7961225636012 chr11 65779462 69469242 167587 14885 0 2 0.0408 1.0286840921128 0.999999194656567 0.999999144658339 11.2587840107491 chr12 69201971 130856877 650008 71795 0 2 -0.0616 0.958200851083797 1 1 9.05366668988091 chr13 48877883 49056026 527620 178144 0 2 -0.0774298007670454 0.947744575561477 1 0.9999 2.96176127178013 chr14 105235687 105262080 243824 26394 0 2 -0.109 0.927230546435463 0.999999997045043 0.999999995272007 9.23785708873229
Who knows how to interpret this and what software is suitable for visualization? How can see which part is amplification, duplication or deletion?
Thanks!
