ChIP data analysis high binding sites

Question

[s.singh]

I have ChIP-seq data and I have mapped it to the reference genome using Bowtie-2. How to find the genomic region that have high binding sites for histone in ChIP data? Which tool should I use to find the binding sites?

[Ming Tommy Tang]

see here for peak calling https://github.com/crazyhottommy/ChIP-seq-analysis#peak-calling

[Mike]

This is best resource for ChIPseq data analysis by Tommy Tang

[s.singh]

Thanks !! It was a great help :)