Microsatellite analysis software

Question

[guillaume.rbt]

Hi all,

I'm not a specialist on the subject, but I have to do a diversity analysis on microsatellites results (I have 12 markers for 88 samples of an haploid fungus). Would anyone know a linux-running software that would compute this kind of analysis?

Thank you

Answer 1

[natasha.sernova]

There are some general tools:

http://bioinformaticssoftwareandtools.co.in/molgenet.php

and search for 'microsatellite'. There are several tools here.

Microsatellite Data Checking Software

http://www.norwichresearchpark.com/research1/researchgroups/elsa/software/microchecker.aspx

http://www.mybiosoftware.com/micro-checker-2-2-3-microsatellite-data-checking-software.html

Microsatellite Analyzer (MSA)

http://i122server.vu-wien.ac.at/MSA/MSA_download.html

For haploid fungus I’ve seen some old paper:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC105135/

and another one that cited the first one and compared two techniques:

http://www.ncbi.nlm.nih.gov.sci-hub.cc/pubmed/19255901

But I don’t know what perticular species are you interested in. I've found something for Aspergillus fumigatus.

[guillaume.rbt]

Thank you very much Natasha, very helpful informations!