When I run this command to index a genome with STAR:
STAR --runMode genomeGenerate --genomeDir output/genome/ecoli/index --genomeFastaFiles output/genome/ecoli/sequence/ecoli.fa --sjdbGTFfile output/genome/ecoli/annotation/ecoli.gtf > output/genome/ecoli/index/message.txt
a Log.txt file is created in my working directory with details about the indexation of the genome. Does anybody know how to write the Log.txt in another directory? Thanks. Cristian
Thank you, it worked.
so, flag this question as answered please (green flag on the left)