Question

scoffold level assembly

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8.3 years ago

reza ▴ 300

i assembled my reads in CLC in contig level, Now i want to join contigs to create scoffolds

is there software to do my request? i can not use software like SOAP due to my RAM limitation.

Assembly next-gen • 1.8k views

ADD COMMENT • link updated 8.3 years ago by dbrowne.up ▴ 80 • written 8.3 years ago by reza ▴ 300

score 1 · Answer 1 · 2016-08-08

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8.3 years ago

Medhat 9.8k

ADD COMMENT • link 8.3 years ago by Medhat 9.8k

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Thank you for your help

ADD REPLY • link 8.3 years ago by reza ▴ 300

score 1 · Answer 2 · 2016-08-10

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8.3 years ago

a23164 ▴ 10

i recommond the sspace too

ADD COMMENT • link 8.3 years ago by a23164 ▴ 10

score 1 · Answer 3 · 2016-08-26

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8.3 years ago

dbrowne.up ▴ 80

BESST is another scaffolder worth checking out. I personally like it a lot better than SSPACE.

ADD COMMENT • link 8.3 years ago by dbrowne.up ▴ 80