Dear mate,
I have a question that need your assistance. How to translate EC number of enzymes in to corresponding Entrez gene ID in large scale (I have around 1000 candidates)?
I appreciate any suggestions.
You can try the mygene.info services.
Start from Gene info annotation service (http://mygene.info/v3/api#MyGene.info-gene-annotation-services ), and restrict fields to ec.
For example the following will get the e.c. of gene 384:
To automatize this for a large number of genes, have a look at the docs and the python APIs: http://docs.mygene.info/en/latest/doc/packages.html
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
version 2.3.6
From EC number to nucleotide sequence with biopython refers to getting sequence but you may be able to modify it if you only need ID's.