How can I get the gene annotation file from Illumina (RNA Sequencing) ?

Question

[debitboro]

Hi all,

I'm performing some network analysis using WGCNA package for RNASeq data. I need the gene annotation file from Illumina for RNASeq. Somebody have an idea about how to get it ?

[GenoMax]

Gene annotation needs to match the reference you used for alignments. Get the annotation from the same source as your reference for consistency (e.g. Gencode, Ensembl, UCSC etc). What genome are you working with?

Answer 1

[Carlo Yague]

Are you talking about illumina iGenome ?