Entering edit mode
8.4 years ago
dearbbhyc
•
0
I have just recently downloaded bed-tools and am trying to get the hang of it. My files seem to be in perfect BEDfile format ; yet when I try intersect them it says that there are non-numeric values. So I looked at the d.type via :
cat -e /Users/casey/Documents/Bedfiles/chr1_2.bed | more
and it looks like the last column does have non numerical values that are not showing in my txt file:
$
\f0\fs24 \cf0 chr1 10169 207666.0\$
chr1 88000 297956.0\$
chr1 258565 358335.0\$
chr1 268963 415287.0\$
chr1 92387 415287.0\$
chr1 287146 477428.0\$
chr1 110582 495598.0\$
chr1 139463 535988.0\$
chr1 357216 733912.0\$
chr1 268963 651035.0\$
chr1 92387 651035.0\$
chr1 286643 712376.0\$
chr1 110079 730504.0\$
chr1 494665 777174.0\$
chr1 139463 777174.0\$
chr1 12788873 12865723.0\$
Is there a way I can change the format of the final column?? Thank you
This appears to be a file edited on a PC. If you have
dos2unix
utility available then run it on this file. Or something along the lines here.