Determine the pool size - data from EBI
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8.3 years ago
mufernando ▴ 10

Hi, I've been working with a few pooled sequences from EBI (http://www.ebi.ac.uk/ena/data/view/PRJNA256231) and now I'm trying to do the SNP calling with CRISP. However, for that I need the pool sizes, which I can't find anywhere.

Does anybody know how to find that?

Thank you.

pooled-sequencing crisp next-gen • 1.2k views
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No expert and presuming that the pool size is the number of individuals the NCBI sra seems to mention the pool size in the experiment design section http://www.ncbi.nlm.nih.gov/sra/SRX661845[accn] . But did not find explicit mention of the pool size in the xml entry.

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