MicroArray Filtering Process/Software?

Question

[Stefan]

Hi Guys,

My PI asked me to filter out some datasets he has from a micro array. He showed me to download cel files from the GEO database and thats about it. He explained to me that the datasets need to filtered by background adjustment, quantile normalization, median polish probeset summarization. Is there a program or software that can be able to achieve the results needed?

Thanks

[GenoMax]

You may also want to look into GEO2R.

[lakhujanivijay]

What platform array data is that? I mean Agilent / Affymetrix or something else?

Answer 1

[keith.hughitt]

You might want to start by checking out the Bioconductor microarray analysis guide: https://www.bioconductor.org/help/workflows/arrays/