why i did not get the output file when i finished running the LTRfinder?

Question

[yifan wang]

why i did not get the output file when i finished running the LTRfinder? and i use Arabidopsis thaliana‘s tRNA as a library. my own genome seq is a mushroom the shell as following: /home/wangyf/waresoft/LTR_FINDER.x86_64-1.0.5/ltr_finder -w 2 -s /home/wangyf/waresoft/LTR_FINDER.x86_64-1.0.5/tRNAdb/araTha1-tRNAs.fa /home/wangyf/repeat/MG122_95kmer.fa 1>ltr.log 2>ltr.err

any idea? thank u !

[GenoMax]

What do ltr.log and ltr.err contain? Sometime programs write output to standard error and what you are looking for may have ended up in one of those files.

[yifan wang]

Predict protein Domains 0.000 second

Sequence: scaffold4 Len:7865 index SeqID Location LTR len Inserted element len TSR PBS PPT RT IN (core) IN (c-term) RH Strand Score Sharpness Similarity No LTR Retrotransposons Found

like this . there is no err information

[GenoMax]

No LTR Retrotransposons Found

It appears that the program worked as expected but did not find any LTR transposons.

[yifan wang]

yes, but what wired is yesterday i asked my friend help me to run ltr_finder in another machine which is a centralization supercomputing sever, it worked and get results. LOL...