Package to classify LncRNA into LncRNAs, intronic LncRNAs and antisense LncRNAs

Question

[sxzhuxu]

Hi,

LncRNA can be classified into intergenic LncRNAs, intronic LncRNAs and antisense LncRNAs.

I have some lncRNAs' position information in gft format. I konw I can perform this subgroup analysis by comparing with reference genome gtf file. But is there any tools or package or convenient way to perform this classification?

Any suggestion?

Thank you.

Answer 1

[pengchy]

Please have a look at gffcompare, through which genomic gff file could be used as reference ("-r").