Question

CCLE normalized/processed RNA-seq data

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9.7 years ago

BIOTIN ▴ 50

Dear all,

Is there any way to find/download CCLE normalized/processed RNA-seq in RPKM/FPKM/RSEM format? I know that this website (https://browser.cghub.ucsc.edu/) contains raw RNA-seq data.

Thanks in advances!

RNA-seq cancer-cell-lines • 7.7k views

ADD COMMENT • link updated 2.1 years ago by Ram 44k • written 9.7 years ago by BIOTIN ▴ 50

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This is actually a very good question! I would need the exact same thing but couldn't find it so far... let me know if you found a solution!

ADD REPLY • link updated 2.1 years ago by Ram 44k • written 9.4 years ago by leshaker • 0

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I'm interested in this as well. Please let me know if you found a solution. Thanks!

ADD REPLY • link updated 2.1 years ago by Ram 44k • written 9.3 years ago by gspeyer • 0

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I am not able to download Raw Data and this website is taking to GDC portal. Is their a way to download CCLE Raw data from GDC portal as well?

ADD REPLY • link updated 2.1 years ago by Ram 44k • written 8.2 years ago by always_learning ★ 1.1k

score 0 · Answer 1 · 2017-03-09

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7.7 years ago

snow.wu • 0

I was able to access the bam files in GDC legacy archive. For the processed data, you can download it from Expression Atlas (EMBL-EBI)http://www.ebi.ac.uk/gxa/experiments/E-MTAB-2770

ADD COMMENT • link 7.7 years ago by snow.wu • 0