Reference assisted genome assembly - TOOLS

Question

[palu]

Hello all. I have the genome sequence of 3 non-conventional yeasts. There are several closed and draft genomes available which i want to use for -> Reference assisted genome assembly!

Can you recommend tools for Reference assisted genome assembly?

Preferable: multiple references can be used draft and closed genomes can be used as references phylogeny information not necessary

Thanks

[Medhat]

can you give more details about library, coverage etc..?

A general answer to your question would be here

Reference Assembly - Mapping Reads To A Reference Genome

and info about tools could be found here

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121819/

[harold.smith.tarheel]

You're more likely to get a useful answer if you ask a good question: see this post for guidance.