ICORN from PAGIT toolkits dose not give me the file ending in '.PerBase.stats'

Question

[Calvin]

Hi, Everyone
The Command line I have been using is icorn.start.sh uncorrected.fasta 1 10 pairedReadsPart_1.fastq pairedReadsPart_2.fastq 35,271 170
As the instruction shown in the journal A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs' , the output file ending in '.PerBase.stats' is able to be obtained

The programme runs smoothly until here it comes several errors.

gzip: pairedReadsPart.cigar: No such file or directory
rm: cannot remove ‘uncorrected.fa.1.ref.fa’: No such file or directory
rm: cannot remove ‘uncorrected.fa.1.qry.fa’: No such file or directory
ICORN will do iteration 2 of 10
.
.
.

The whole programme is still running even though there are above errors appeared.
I am not sure whether no '.PerBase.stats' is caused by those errors or not. I have been trying several times and still no change. Am i missing something???

Answer 1

[dhingra.akshay]

Hey Calvin,

have you found the solution for this problem?

I am facing the same.