Rotating/flipping multiple clades in ggtree

Question

[723388]

Hello all

I am currently rotate 2 different clades on ggtree and I keep running into errors. The code is as follows

a <- groupClade(tree, c(289,294)) + groupClade(tree, c(162,197)) b <- ggtree(Grouped,layout = "circular",branch.length = 0,) Rotated_Tree <- rotate(b, 289) %>% rotate(294) + rotate(b,162) %>% rotate(197) Error in get.offspring.df(df, node) : input node is a tip...

I tried to use the flip function instead as the grouped clades share the same parent. plot(b,flip(b,289,294) + flip(b,162,197)) Error in flip(b, 289, 294) : node1 and node2 should share a same parent node... Node 1 and 2 do share a parent node and this same error occurs when trying to flip 162 and 197.

Please advise, thank you for any correspondence.

Kind regards Warren

[Guangchuang Yu]

pls follow the guide and post a reproducible example.