Where to download processed time course RNA-seq data in human?

Question

[Naresh D J]

Hi,

Does anyone know where I can download the processed any time course RNA-seq data in human in terms of either raw counts, RPKM, CPM or RSEM?

Thank you,

Answer 1

[Carlo Yague]

Raw counts : the fission dataset in R (I found it here)

library("fission")
data("fission")
ddsTC <- DESeqDataSet(fission, ~ strain + minute + strain:minute)

[Naresh D J]

Thanks Carlo Yauge. But I am looking for data in human and edited my question.

[Carlo Yague]

I didn't find time courses experiments in human but for future reference, I found some in rat, mouse, worm and fly : ReCount

Answer 2

[roy.granit]

You might want to checkout Repositive, one can easily search there for expression datasets.. and they have quite a selection of data sources

[Naresh D J]

Does it provide a processed data? and it seems only the raw data.

[roy.granit]

hmm.. yes it's not clear if one can get the processed data. I would imagine that in some of these databases one can upload processed data.