Extracting subalignments from MAF file

Question

[prosvirov.k]

Hello, dear colleagues,

I need to extract subalignments of mRNA from MAF format file. I have .MAF multiz alignment and .GFF3 file for hg19, so how can I possibly do it?

Thanks in advance

[Peter]

Have a look at https://github.com/bxlab/bx-python