Cluster species into taxonomic groups by tax ID
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8.2 years ago
Juan Cordero ▴ 140

Dear community,

I would like to be able to cluster all species from InParanoid DB into different groups, at different evolutionary distance cutoffs, using tax IDs as an input. For instance, I would like to cluster all species into Bacteria, Archaea, Metazoa, Plantae and others; so depending on where you set the cutoff on the taxonomic tree, I would like to get a different grouping.

Does anyone know any tool to do this?

Thanks a lot in advance

taxonomic tree tax id clustering • 1.7k views
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this is the same type of problem as discussed in Obtain full taxonomic hierarchy from multiple species names

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