diabetes data in fastq format

Question

[rsabrina93]

can any one help me find a diabetes NGS data in fastq format that is downloadable?

[WouterDeCoster]

This question requires more information. Which organism, which type of sequencing (RNA-seq/WES/WGS/...),...?

[rsabrina93]

organism-Homo Sapien seq data- ATAC-seq

Answer 1

[frcamacho]

Since I am unsure what type of organism and sequencing I will assume human WGS data. You can download "A metagenome-wide association study of gut microbiota in type 2 diabetes" of 225 WGS samples from here: (http://www.ncbi.nlm.nih.gov/sra?term=SRA050230). You can use NCBI SRA toolkit to download the SRAs and then fastq-dump to convert the sra files to fastq files here: http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software

If you need further help just let me know. Best of luck.

[rsabrina93]

organism - Homo sapien Seq data- ATAC-seq data