Genome Viewer: Many loci overview

Question

[michaela_boell]

Dear fellow sequencing analyzers,

I wondered how to present my findings. I have a long table with hundreds of reads (sam file). I want to show where they align in the genome. What I imagine is the view on a chromosome and pointers indicating that there are places all over the genome. I wondered whether there is already a program out there that can achieve something like it?

Answer 1

[dago]

I think that Circos is a really good option. I think that many others had similar needs: Circos-How To Generate Circos Image Of Snp And Indel Across Chromosomes