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8.5 years ago
komal.rathi
★
4.1k
Disclaimer: Crossposted on Bioconductor.
I am using the CRLMM package. We have about 21000 IDATs that belong to the following array types:
Array Annotation Package (Guess)
HumanHap550 human550v3b
Human610-Quad human610quadv1b
HumanOmniExpress-24v1-1 Not sure
HumanOmniExpress-24v1-0 Not sure
HumanOmniExpress-12v1-1 humanomniexpress12v1b
HumanOmniExpress-12v1-0 humanomniexpress12v1b
These are the annotation packages supported by CRLMM:
> validCdfNames()
[1] "genomewidesnp6" "genomewidesnp5"
[3] "human1mv1c" "human370v1c"
[5] "human650v3a" "human610quadv1b"
[7] "human660quadv1a" "human370quadv3c"
[9] "human550v3b" "human1mduov3b"
[11] "humanomni1quadv1b" "humanomni25quadv1b"
[13] "humanomni258v1a" "humanomni258v1p1b"
[15] "humanomni5quadv1b" "humanomniexpress12v1b"
[17] "humanimmuno12v1b" "humancytosnp12v2p1h"
[19] "humanexome12v1p2a" "humanomniexpexome8v1p1b"
I am not certain which annotation packages (validCdfNames) will go with the human omni express arrays mentioned above. Any help would be much appreciated.
Thanks!