Reporting 2nd best hit with FASTA36
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8.1 years ago

I am running the following command on FASTA36 (glsearch36 -C 20 -b 2 -E 1e-100), the query file and database are the same. I am looking to report the second best hit only. Does anybody in the community know how to do this? Would it be possible to report hits that are less than 100% identical? Many thanks

alignment fasta36 • 1.3k views
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