on line COG analysis

Question

[buthercup_ch]

Hello everyone,

We obtained the complete genome of a bacterial strain and now I am analyzing the sequence. I am trying to perform any functional analysis and by now done with the one based in KEGG categories, what is quite broad. I am working also in GO enrichment, but wanted to compare to a COG analysis.

I am not computational, so I am interested in a way to do a COG analysis simply and on line, by so far I couldn't find anything besides de software COGcognitor that I have download from https://www.ncbi.nlm.nih.gov/COG/, but that I don't know how to use. Does any have any recommendation?

Thanks in advance

[sidrairshad29]

how do i make a pie chart for my COG?

[Farbod]

Dear sidrairshad29 , Hi

I think if you have the "categories" and the "numbers" belong to each functional category, you can use any software (e.g R, Microsoft Excel. Adobe Illustrator, . . . ) for drawing your pie-chart.

Or maybe I did not get the point correctly ?

Take care

[sidrairshad29]

thank you so much. i have done what i needed. first i send my proteome to WebGMt and then make pie chart using excel

[Farbod]

~ Bonne chance !

Answer 1

[Prasad]

you can use WebMGA or BASys. a standalone tool BPGA

Answer 2

[Farbod]

Dear buthercup_ch, Hi.

Have you tried this :

http://weizhong-lab.ucsd.edu/metagenomic-analysis/server/cog/