Question

Mapping to protein networks

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8.1 years ago

khorms ▴ 230

I have a set of human proteins and I want to map them at protein network in order to know, whether they interact which each other. Which servers are the most useful for this purpose? Thank you!

protein network mapping • 1.8k views

ADD COMMENT • link updated 8.1 years ago by ssv.bio ▴ 200 • written 8.1 years ago by khorms ▴ 230

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String is an important resource for that http://string-db.org/

ADD REPLY • link 8.1 years ago by microfuge ★ 1.9k

score 3 · Answer 1 · 2016-10-10

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8.1 years ago

ssv.bio ▴ 200

CPDB, IPA, Visant in addition to string. WGCNA, BIONET, MEGENA, Connectivity map, for detecting functional association if you have expression data.

ADD COMMENT • link 8.1 years ago by ssv.bio ▴ 200

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It would be best to include links for programs you are mentioning in the post.

ADD REPLY • link 8.1 years ago by GenoMax 147k

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Are there any good publications about comparison of these methods? By the way, it looks like IPA is not a free product, is it?

ADD REPLY • link 8.1 years ago by khorms ▴ 230