How to do gene enrichment analysis using only GO-slim terma

Question

[Saad Khan]

Hi,

Most bioconductor packages use all GO terms. I was wondering if you know of any bioconductor package that does gene enrichment using only GO slim terms

thanks

Answer 1

[EpiExplorer]

You can try PANTHER Gene List Analysis and choose Panther Go Slims in the annotations drop down (http://www.pantherdb.org). Let me know how you go.

Good Luck.