any option in somatic sniper to analyze on a region or bed file of regions?

Question

[haynes]

We generally farm things out to a cluster and give each job a small section of the genome and then combine the outputs. Is there an option for analyzing only a region or a set of regions from a bed file in somaticsniper?

Answer 1

[ernfrid]

No, there is not. This other Biostars question and answer provide a work around. Using SomaticSniper to call variants in specific regions?