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8.1 years ago
velagaleti
•
0
Can someone help me in creating a CIRCOS plot for my array data? I am completely ignorant and tried to read from Circos website, but not able to get any where. Please let me know if someone can help.
Did you try to use the R package ? https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-244
Have you looked at these examples? https://cran.r-project.org/web/packages/RCircos/RCircos.pdf
Example workflow for rcircos: https://digibio.blogspot.in/2014/07/gene-expression-and-circos-plot.html
I am not sure what R package is? As I said, I am totally ignorant about this. Other than seeing these amazing figures in papers, I am not sure how to do this. Thanks.
A bit of effort to google and learn from tutorials and forums it would help I guess. You can start witht he tutorial linked by ssv.bio
Please used
ADD COMMENTorADD REPLYto answer to earlier posts, as such this thread remains logically structured and easy to follow.try this online circos plot generator: http://codoncloud.com:3000/get-started
Check out Omic Circos .
https://www.bioconductor.org/packages/devel/bioc/vignettes/OmicCircos/inst/doc/OmicCircos_vignette.pdf
I found this tutorial really helpful to get started with Circos.
You can use the genomeVx. It's to easy, and you can improve the imge on your preference on corel for example.
http://wolfe.ucd.ie/GenomeVx/