Principal Component Analysis Before or After Imputation
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8.1 years ago

Hello, Would you mind answer the following questions, please?
1- Do we run the PCA analysis before or after imputation? 2- Is it ok if we use only the genetic data of the study to get covariates to adjust for the effect population stratification? Or we have to use a reference population before we run the PCA. Thanks!

PCA • 2.3k views
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