Obtaing SNP's using TCGA and NCBI
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8.1 years ago
Kachibunny • 0

Hi guys, So I have this research task to find all the available SNP's present in a certain type of cancer using the TCGA website, I have been able to find the mutations and the single nucleotide variations present in said cancer by manually searching through the website and performing a query using the cBioportal. I am supposed to find the significance of these variations in the healthy population and their percentages. For this I went to NCBI to manually check on their SNP portal. Unfortunately I could not find matches to any of my chromosome positions. I was wondering if their would be any other database present were I can do this. Or if there is a script/ program I could write using python that would make my life more easier rather than manually searching. Thanks guys!

N.B, I am still kind of learning python and Biopython.

SNP TCGA NCBI biophython • 1.3k views
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