For cufflinks error of using gff files

Question

[bandanaschapagain]

Hie everyone, I am using bowtie for the alignment of the reads. The output of the bowtie is used to cufflink.For cufflink I am using -g -GTF option to give the reference genome gff file. But cufflinks dose not take that. I am very new in this field and I have no idea how to solve this. I request you all to give some help to me.

Regards, Bandana

[Jeffin Rockey]

Please indicate the error that you are getting..