Identifiy new miRNA

Question

[nasromer2191989]

Hi everybody I am looking for the informatics tool to identify new miRNA that associated with specific cancer by use the previous known miRNA found in different expression in that cancer?

which tool could I use for example to build a model than scan that model against the database to pick up based in sequence information?

Anyone have advise for that idea thanks

[WouterDeCoster]

Please use a more informative title for your posts and follow up on your earlier questions!

[nasromer2191989]

Hi WouterDeCoster

like what information do you need

Thanks

[WouterDeCoster]

1) The title of your post contains just "need the approach": be more informative. People browsing this forum need to know what your post is about by the title.

2) You have asked a few question already, on which many people have contributed to help you. It's only fair that you up vote helpful answers and mark a post as accepted if the answer resolved your question.

[nasromer2191989]

Dear WouterDeCoster

Really sorry

I do not put the question in right format or less informative. I have collect miRNA that linked to one cancer. I was planing to use HMMER to build model then predict new miRNA related to same cancer . Since HMMER is not recommended for nucleotide so I hope to find tool that could do predication by use the known sequence of miRNA.

THANKS

[Prasad]

You asked a similar question here . Was it not answered??

[nasromer2191989]

Dear Prasad

Really sorry

I do not put the question in right format or less informative. I have collect miRNA that linked to one cancer. I was planing to use HMMER to build model then predict new miRNA related to same cancer . Since HMMER is not recommended for nucleotide so I hope to find tool that could do predication by use the known sequence of miRNA.

THANKS