Forum:Your Favorite Bioinformatics Blogs (March 2010)
38
92
Entering edit mode
14.7 years ago

I think that for a professional is very important to follow blogs focused on his own speciality, it is a good way to learn without too much effort and to stay updated. Which bioinformatics-related blogs do you usually read?

note: there is a similar question posted on stackoverflow.

Note:

subjective • 24k views
ADD COMMENT
1
Entering edit mode

ok, I have changed the title to the plural form: "blogs" instead of "blog". So, provide us all your favorite links! :-)

ADD REPLY
0
Entering edit mode

Why is this tagged off-topic? Can somebody explain this, please.

ADD REPLY
49
Entering edit mode
14.7 years ago

Blogs:

Moreover, I also find useful to follow the blogs from many bioinformatics services or databases:

ADD COMMENT
23
Entering edit mode
14.7 years ago

mine of course ! :-) http://plindenbaum.blogspot.com

See also: Bioinformatics blogs on Nature-blogs: http://blogs.nature.com/blogs?tags=bioinformatics

And the life-scientists group on FriendFeed: http://friendfeed.com/the-life-scientists

ADD COMMENT
23
Entering edit mode
14.7 years ago

Shameless plug for the bioinformatics subreddit (of which I am a moderator).

ADD COMMENT
0
Entering edit mode

Since this was chosen as the top answer, I've added a link to BioStar in the sidebar of the bioinformatics subreddit.

ADD REPLY
0
Entering edit mode

Thank you that's really nice.

ADD REPLY
20
Entering edit mode
13.4 years ago

There are so many great blogs out there, I love Openhelix blog, and many others already listed. But reading all blogs takes ages, though I have everything fed into my Google Reader.

That's the reason why last week we started our new community-based project biotricks.net, which is a meta-blog linking out to interesting tips, tricks, and tools for bioinformaticians but also hosts own articles, scripts, code lines, etc.

At the moment it is quite basic, but like BioStar it will become more interesting the more people are using it.

So please support and contribute to this project. Thanks.

http://www.biotricks.net

ADD COMMENT
0
Entering edit mode

I linked it on the bioinformatics subreddit (http://redd.it/i64rn). Hopefully it will get some exposure there. Success with the project!

ADD REPLY
0
Entering edit mode

Good one. Bookmarked it.

ADD REPLY
0
Entering edit mode

Great, Jeroen. Thanks for that. Thumbs up for you guys. Thanks for the support.

ADD REPLY
13
Entering edit mode
14.7 years ago
Alex ▴ 190

https://www.biostars.org

ADD COMMENT
0
Entering edit mode

eheh :-) this sounds familiar...

ADD REPLY
0
Entering edit mode

Hi everyone, slightly unrelated note. Remember to vote on posts, questions if you like them. That is the way to accumulate reputation that in the end allows the users to moderate content (see FAQ for more info). Also it is recommended to select the best answer for a question.

ADD REPLY
13
Entering edit mode
14.7 years ago
Suk211 ★ 1.1k

A friend of mine is a very active blogger in bioinformatics. This is his blog site

Fisheye Perspective

He has also complied a list of bioinformatics and chemo informatics blogs which are very popular. some of you might be interested in it.

30+ Blogs about Bioinformatics and Chemoinformatics Programming

ADD COMMENT
0
Entering edit mode

Abhishek's is one of the bests :-)

ADD REPLY
0
Entering edit mode

That is a good list

ADD REPLY
12
Entering edit mode
14.7 years ago

Here is one that I follow, but I'm interested in adding more blogs to my feed:

ADD COMMENT
1
Entering edit mode

Second that. Good one for python

ADD REPLY
0
Entering edit mode

agreed, brad does interesting stuff.

ADD REPLY
11
Entering edit mode
14.6 years ago
Zach Stednick ▴ 660

Getting genetics done, covers more than just bioinformatics and is a bit heavy on the GWAS but overall is a well-done blog.

ADD COMMENT
10
Entering edit mode
14.7 years ago
Darked89 4.7k

Maybe not The Greatest but these few are covering next gen sequencing:

http://www.massgenomics.org/

http://www.fejes.ca/labels/DNA.html

http://omicsomics.blogspot.com/

ADD COMMENT
0
Entering edit mode

For bioinformatics for cancer research, Dan's blog is very up to date and presented extremely well.

ADD REPLY
10
Entering edit mode
14.2 years ago
Treylathe ▴ 950

Shameless plug for the OpenHelix blog. We talk about databases and resources in genomics/bioinformatics for the end user/experimental biologist, have tips of the week, etc.

In addition to some mentioned above, I like business|bytes|genes|molecules

ADD COMMENT
0
Entering edit mode

Very useful for graduate students (and bioinformatics librarians)

ADD REPLY
0
Entering edit mode

Jap, it's also my favourite too

ADD REPLY
9
Entering edit mode
14.7 years ago
Michael Barton ★ 1.9k

Very large list of bioinformatics blogs from the now defunct Nodalpoint wiki

ADD COMMENT
7
Entering edit mode
14.2 years ago
Bongsoo Park ▴ 70

I like the OpenHelix Blog. :D

http://blog.openhelix.eu/

ADD COMMENT
6
Entering edit mode
ADD COMMENT
0
Entering edit mode

Your blog has been voted among the top 15 Bioinformatics blogs in 2010. Congrats!

ADD REPLY
0
Entering edit mode

Many thanks! Manuel

ADD REPLY
5
Entering edit mode
14.2 years ago

A lot has been written above, so I'll add something different. One reason to follow a blog is to be a part of the conversation or simply to "listen in." This is why we go to conferences. And so, I think that one should also be on Twitter in order to do the same - listen and add to the conversation. Clearly, Twitter and a blog are different formats and come to you in different ways, but they are both useful tools in getting you connected to other people and their ideas, as well as putting yourself into the conversation.

@larry_parnell varigenome.blogspot.com

ADD COMMENT
5
Entering edit mode
13.7 years ago
Ajene ▴ 90

Well, more than "favourite" blog I can list the ones I like (this is, the ones that passed the filter and I'm still following). Apart from Giovanni's and Pierre's, and other more technical blogs already mentioned, I'm interested in the sequencing technologies, personal genomes and publication ethics. This is then my small list:

http://nsaunders.wordpress.com/ - Bioinformatics and other stuff

http://cameronneylon.net/ - On communicating science

http://www.genomesunzipped.org/ - On personalized Genomics

Can't help to add a shameless plug to our group's blog on Computational OncoGenomics: http://bg.upf.edu/blog/

ADD COMMENT
0
Entering edit mode

thank you Alba!! I saw your blog a while ago but I didn't notice that now you have started blogging on it actively. I will add it to my rss feeder :-)

ADD REPLY
5
Entering edit mode
ADD COMMENT
5
Entering edit mode
13.4 years ago
Luca Cerone ▴ 50

Hi, I found some interesting posts on http://www.biotricks.net/ The blog is quite new, and there are many interesting guides, for beginners and the curious. Definitively will keep following it!

ADD COMMENT
4
Entering edit mode
ADD COMMENT
3
Entering edit mode
14.2 years ago
Mary 11k

I just remembered this--there's a good thread on blogs in this arena from the SEQanswers forum:

http://seqanswers.com/forums/showthread.php?t=5024

ADD COMMENT
3
Entering edit mode
14.2 years ago

I am quite keen of some of the in-depth blogs about metabolomics, such as this blog by Gilleain around metabolite identification.

ADD COMMENT
3
Entering edit mode
13.7 years ago

My little contribution to the Bioinformatics Field: http://www.bioinformatics.fr

ADD COMMENT
3
Entering edit mode
ADD COMMENT
0
Entering edit mode

http://jeffreyliu99.blogspot.com : A good blog for proteomics

ADD REPLY
0
Entering edit mode
ADD REPLY
3
Entering edit mode
13.5 years ago
Nir London ▴ 220

As WoA Nicely put: the Macromolecular Modeling Blog other related blogs I read (but don't write at): sort of ranked by relevance to structural bioinformatics:

Some update more routinely than others.. What other computational structural biology blogs you know ?

ADD COMMENT
2
Entering edit mode
13.4 years ago
Jun ▴ 20

http://www.biotricks.net/ is definitely worthwhile to try.

ADD COMMENT
2
Entering edit mode
ADD COMMENT
2
Entering edit mode
13.1 years ago
Homologus ▴ 20

We started a blog at http://www.homolog.us to write on transcriptomics and next-gen sequencing. Here is a brief description of our objectives.

ADD COMMENT
2
Entering edit mode
12.5 years ago
cba ▴ 20

This one has just started but contains interesting media files and source code:

http://bio-tools.org/

ADD COMMENT
1
Entering edit mode
13.9 years ago
Sptaylor ▴ 120

I like Getting Genetics Done available here: http://gettinggeneticsdone.blogspot.com/

ADD COMMENT
1
Entering edit mode
13.5 years ago

Every thing and anything related to Bioinformatics ...Jobs in Bioinformatics, Bio Java, Bio Ruby, Sequencing, Free Downloads, Video tutorials

http://amitvikram-bioinformatics.blogspot.com/

ADD COMMENT
1
Entering edit mode
13.5 years ago

Biocoders.net is actually mine, additionnaly to a being a blog i am using it as a strong online collaboration tool, synchronizing my social networks with it, it is :

Facebook Linkedin Twitter Github Sourcefoge

Like all in one web app.

Rad

ADD COMMENT
1
Entering edit mode
11.5 years ago

Here is what I read on a regular basis:

http://core-genomics.blogspot.com - "personal blog written by James Hadfield who runs a Genomics core facility Cambridge" - lots of interesting technical details about next-generation sequencing

http://massgenomics.org - medical genomics blog by Dan Koboldt, a staff scientist at the Genome Institute at Washington University

http://www.genomesunzipped.org - popular blog run by several genomics researchers

http://blog.openhelix.eu - as mentioned in other responses, this covers tutorials and FAQs for common bioinformatics tools

http://gettinggeneticsdone.blogspot.com - as mentioned in other responses, a well-maintained blog written mostly by Stephen Turner (Bioinformatics Core director at University of Virginia)

Also, I am baised, but I also have my own blog:

http://cdwscience.blogspot.com - My Biomedical Informatics Blog

ADD COMMENT
0
Entering edit mode

Thank you for your links. Note that we did another version of this discussion in 2011 (Your favorite bioinformatics blogs (October 2011) ). Maybe we should do another for 2013.

ADD REPLY
0
Entering edit mode

Ok, thanks - I have copied and modified this post for the 2013 edition:

Your Favorite Bioinformatics Blog(s) (2013 edition)

ADD REPLY
0
Entering edit mode

This is mine, Bio <> Chem http://cdsouthan.blogspot.se/

ADD REPLY
1
Entering edit mode
8.1 years ago
dago ★ 2.8k

The Genome Factory

ADD COMMENT
1
Entering edit mode
8.1 years ago

I've never added mine, which is bioinfoblog.it Topics: bioinformatics best practices, planning, genetics, R, dplyr, ontology enrichment, bioinformatics in the pharma industry.

ADD COMMENT
1
Entering edit mode
8.1 years ago
Tonor ▴ 480

More for viruses: Bioinformatics I/O - Tips && tricks from a cluster of bioinformaticians: http://bioinformatics.cvr.ac.uk/blog/

ADD COMMENT
0
Entering edit mode

Both this, Torsten's and Giovanni's blog have now been added to the planet. Posts should show up by tomorrow.

ADD REPLY
1
Entering edit mode
8.1 years ago
dago ★ 2.8k

https://www.r-bloggers.com

ADD COMMENT
1
Entering edit mode
6.4 years ago
CY ▴ 750

My bioinformatics blog: https://www.dna-ghost.com/. Welcome to comment. It covers bioinformatics and cancer genomics.

ADD COMMENT
0
Entering edit mode
7.9 years ago
Chun-Jie Liu ▴ 280

It can't be regarded as blog, but it's hub of bioinformatics software and databases https://omictools.com/.

ADD COMMENT
0
Entering edit mode
7.2 years ago
KVC_bioinfo ▴ 600

My preferences are:

RNA-seq Blog

Genomeweb

BiosmartBrief

NGS

All these blogs are free and I find them very useful.

ADD COMMENT

Login before adding your answer.

Traffic: 1761 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6