genotype frequency data

Question

[aidpranculis]

There are a lot of tools out there to annotate variation and get allele frequencies from different project data, but can anyone suggest a method (not a browser) or a tool to get genotype frequencies/counts for variants from projects like 1000g, UK10k or aggregation consortia like gnomAD and Kaviar?

[vakul.mohanty]

ANNOVAR should be able to get you the minor allele frequency from the studies that are part of its database

[aidpranculis]

true, but i am looking for genotype frequencies

[vakul.mohanty]

My apologies I missed that some how.

True I can think of no annotator that spits out genotype frequencies.

Answer 1

[Ron]

Check this post : Genotype Frequencies Calculation