Entering edit mode
8.0 years ago
luca
•
0
Hi everyone! I was trying to align 12S sequences into Mafft and I got this error message, while the program was calculating the distance matrix:
Making a distance matrix...
Allocation error( 541556284 int vec )
I found where, inside the program (this is the link: http://bugs.arb-home.de/browser/trunk/GDE/MAFFT/mafft-7.053-without-extensions/core/mtxutl.c?rev=10348), the error is generated (line 239 in the link), but I do not understand the programming language, so I was hoping if someone could tell me what is happening and why I get this error...
All the help is more than welcome!
Thanks
Luca
First Link is not working, and the error is from line 245 to 250 reason is
as the error declared there is no enough memory to allocate this variable for your run can you write info about the machine, OS tht you run the program on; I think it is memory issue
Sorry, I realised I made several mistakes in my post... This is the correct link: http://bugs.arb-home.de/browser/trunk/GDE/MAFFT/mafft-7.053-without-extensions/core/mtxutl.c?rev=10348
The error should be in line 229 and not 239... The machine is a server with CentOS 7 and 1TB RAM.