Entering edit mode
8.0 years ago
jolespin
▴
150
What are the most reputable and robust correlation measures for compositional data like gene expression profiles?
To my knowledge there arebiweight midcorrelation
which is implemented in WGCNA
and SparCC
. Biweight midcorrelation
is relatively easy to code up to use outside of R
's environment. There is also SparCC
which is another robust correlation measure implemented in Python
and very difficult to reverse engineer to use outside of the command-line.
Are there are any others I can look up? Preferably without having to use a separate program to run the measure (but still open to this).