mapping file for KEGG IDs

Question

[Quak]

I wonder if there exists any table, mapping kegg entries e.g K01952 to its definition / pathway and modules ? e.g http://www.genome.jp/dbget-bin/www_bget?ko:K01952

Answer 1

[5heikki]

Pathway - definition

curl http://rest.kegg.jp/list/pathway

KO - definition

curl http://rest.kegg.jp/list/ko

Module - KO

curl http://rest.kegg.jp/link/ko/module

Pathway - KO

curl http://rest.kegg.jp/link/ko/pathway

See KEGG API

You can easily build any kind of mapfile from these by applying join and sort

Answer 2

[poojasethiya]

If you want the entries in table format for your gene list (id's : Entrez, Ensembl, Uniprot) you can use kobas. http://kobas.cbi.pku.edu.cn/anno_iden.php

~Pooja

[Quak]

Thanks but I have a KEGG ID list instead of a gene list.