Protein - Ligand interaction listing

Question

[arronar]

Hi!

I was wondering if you know any program/script for linux or not, that can calculate the interactions between Ligand and protein from a pdb file. When I'm saying interactions i mean, h-bonds, aromatic interactions, hydrophobic bonds etc.

Thanks

Answer 1

[merzanaeem007]

Hey,

You could try PLIP from TU Dresden from this link; https://plip-tool.biotec.tu-dresden.de/plip-web/plip/index They also have a downloadable version for batch operations. GL