How to access the tranche repository (proteomics data repository)?

Question

[Leite]

Hello, everyone

Someone can help-me at to access the tranche repository (Univ. of Michigan) for MS data acquisition?

The URL (https://www.proteomecommons.org/tranche/) does not work. When I try to access, I'm redirected to another page.

Best regards,

[natasha.sernova]

See this article:

Proteomics data repositories

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2908408/

It also mentioned that particular url.

Maybe another source will be suitable to you?

See this article below:

Proteomics data repositories: Providing a safe haven for your data and acting as a springboard for further research

http://www.sciencedirect.com/science/article/pii/S1874391910001867

[Leite]

Hello @natasha.sernova I'm trying to download data that was indexed in this database.

So, i've tried this url http://www.tranche.proteomecommons.org/, Which the paper mentioned.

But same message: "Can not access this site Could not find server's DNS address"

Answer 1

[Lars Juhl Jensen]

The Proteome Commons Tranche sadly shut down around 2013 due to lack of funding. It is a good example why important bioinformatics infrastructure needs dedicated funding and should not have to operate out of research grants for individual groups.

[Leite]

Hello Lars Juhl Jensen, thank you very much for the answer. I'm looking at data that was in this database, you know if they were moved to another repository.

[Lars Juhl Jensen]

I do not believe all data were systematically moved to another database when Tranche ceased to be. You could trying to search in the PRIDE database; if it is not there your best chance is probably to contact the authors.

[Leite]

Thank you so much Lars Juhl Jensen, I'll try contac the authors. Best regards,