Tool:PlantTFDB and PlantRegMap: Plant Transcription Factor Database and Plant Regulation Data and Analysis Platform
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8.1 years ago
jin ▴ 80

Plant Transcription Factor Database (PlantTFDB) provides a comprehensive, high-quality resource of plant transcription factors (TFs), regulatory elements and interactions between them. In the latest version, It contains 320 370 TFs, classified into 58 families, from 165 species. Abundant functional and evolutionary annotations (e.g., GO, functional description, binding motifs, cis-element, regulation, references, orthologous groups and phylogenetic tree, etc.) are provided for identified TFs. In addition, multiple online tools are set up for TF identification, regulation prediction and functional enrichment analyses. A portal PlantRegMap is set up for users to access the regulation resource and analysis tools conveniently.

Jin JP, Tian F, Yang DC, Meng YQ, Kong L, Luo JC and Gao G. (2016). PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. Nucleic Acids Research, doi: 10.1093/nar/gkw982.

transcriptional-regulation enrichment binding-site • 6.7k views
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Nice resources for the study of plant transcriptional regulation

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A portal PlantRegMap it doesnt work... no connetion...

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Due to the network connection issue of Peking University, these resources aren't available currently and will be recovered soon.

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A portal PlantRegMap it doesnt connet...

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Due to the network connection issue of Peking University, these resources aren't available currently and will be recovered soon.

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7.9 years ago
Chun-Jie Liu ▴ 280

Provide a comprehensive animal transcription factor database AnimalTFDB. A vedio user guide for AnimalTFDB v1

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