what are the sources to analyze and visualize annotated fasta reads ?

Question

[faizansaleem1992]

Hello, I have assembled and annotated my raw illumina sequences, and now I want to visualise and analyze my annotated fasta reads. Kindly mention some sources i.e softwares, web servers etc. except mg-rast.

[Abdul Rafay Khan]

What type of reads you have ? DNA or RNA

[faizansaleem1992]

I have assembled DNA reads in fasta format.

[WouterDeCoster]

With what did you annotate the assembly? What is the aim of your visualization?

[faizansaleem1992]

I have metagenomic data and want to get the taxonomic and functional annotation.

Answer 1

[Abdul Rafay Khan]

You need to map sequencing reads to a reference genome with Bowtie2.