error in convert srt to fastq

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7.9 years ago

mra8187 ▴ 20

Dear all when i try to convert srt to fastq see this error .. what can i do ? (i Command Prompt in windows 10)

G:\africanized>fastq-dump --split-files -gzip "G:\africanized\SRR3654621.sra" 2017-01-03T06:55:44 fastq-dump.2.3.4 err: column undefined while opening cursor within virtual database module - failed to resolve column 'READ' idx '1' 2017-01-03T06:55:44 fastq-dump.2.3.4 err: column not found while opening table within short read archive module - failed /G/africanized/SRR3654621.sra

============================================================= An error occurred during processing. A report was generated into the file 'C:\Users\mra/ncbi_error_report.xml'. If the problem persists, you may consider sending the file

=============================================================

RNA-Seq • 2.9k views

ADD COMMENT • link updated 6.6 years ago by huangziyan11111 • 0 • written 7.9 years ago by mra8187 ▴ 20

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I meet the same problem, have you solved it?

ADD REPLY • link 6.6 years ago by huangziyan11111 • 0

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ya i solved it by using newest version

ADD REPLY • link 6.6 years ago by mra8187 ▴ 20

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Before digging into it, upgrade to the current version, which is 2.8.2 or something. Yours is quiet outdated.

ADD REPLY • link 6.6 years ago by ATpoint 85k

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